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Home » How To Guides

How To Guides

Here are some guides to help you get started with Nexus Copy Number and Nexus DB.

Data Loading Guides

Affymetrix

  • How to load and process Affymetrix CEL files
  • How to load and process Affymetrix CEL files using ASCAT processing
  • How to load and process Affymetrix CNAT files
  • How to load and process Affymetrix CNCHP files
  • How to load and process Affymetrix MIP (OncoScan) files
  • How to load and process Affymetrix MIP (OncoScan) files using ASCAT processing

Agilent

  • How to load and process Agilent FE files

Illumina

  • How to load and process Illumina data using ASCAT processing and the plugin
  • How to load and process Illumina data using ASCAT processing without the plugin
  • How to load and process Illumina data using the plugin
  • How to load and process Illumina data without using the plugin

Roche NimbleGen

  • How to load and process Roche NimbleGen SNP arrays
  • How to load and process Roche NimbleGen arrays

Other

  • How to load and process data for matched paired analysis
  • How to load and process replicate data
  • How to load and process Illumina data using PennCNV segmentation

Nexus DB Guides

Accessing Data

  • How to Access the ISCA Data in Nexus DB – For Nexus Solo Users
  • How to Access the ISCA Data in Nexus DB – For Nexus Copy Number Users
  • How to Access AGRE Data in Nexus DB

Other Visualization and Analysis Guides

Annotation Tracks

  • How to add ISCA tracks
  • How to add UCSC tracks

Recent News

  • June 17-19 – Educational Webinar Series: Copy Number and Allelic Event Measurements, Aneuploidy, and ASCAT
    June 17-19 – Educational Webinar Series: Copy Number and Allelic Event Measurements, Aneuploidy, and ASCAT May 31, 2013
  • BioDiscovery Releases Nexus Copy Number Version 7 for DNA Copy Number and Sequence Variation Analysis and Visualization
    BioDiscovery Releases Nexus Copy Number Version 7 for DNA Copy Number and Sequence Variation Analysis and Visualization April 16, 2013

Recent Webinars

  • June 17-19 – Educational Webinar Series: Copy Number and Allelic Event Measurements, Aneuploidy, and ASCAT May 31, 2013
  • Constitutional and Cancer Sample Review for Cytogeneticists: Copy Number and Sequence Variant Analysis Using Nexus Copy Number 7 May 14, 2013

Upcoming Events

  • June 17-19 – Educational Webinar Series: Copy Number and Allelic Event Measurements, Aneuploidy, and ASCAT
  • June 8 – 11
    European Human Genetics Conference (ESHG) 2013

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Recent Publications

March 2013
JO Korbell and PJ Campbell

Criteria for inference of chromothripsis in cancer genomes.

READ MORE
April 2013, L Liang et. al.

Identification of Chromosomal Errors in Human Preimplantation Embryos with Oligonucleotide DNA Microarray

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April 2013, JK Killian et. al.

Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor.

READ MORE

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